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*'''Where:''' 901 Van Vleck Hall
*'''Where:''' 901 Van Vleck Hall
*'''Organizers:'''  [https://math.wisc.edu/staff/fabien-maurice/ Maurice Fabien], [https://people.math.wisc.edu/~rycroft/ Chris Rycroft], and [https://www.math.wisc.edu/~spagnolie/ Saverio Spagnolie],  
*'''Organizers:'''  [https://math.wisc.edu/staff/fabien-maurice/ Maurice Fabien], [https://people.math.wisc.edu/~rycroft/ Chris Rycroft], and [https://www.math.wisc.edu/~spagnolie/ Saverio Spagnolie],  
*'''To join the ACMS mailing list:''' Send mail to [mailto:acms+join@g-groups.wisc.edu acms+join@g-groups.wisc.edu].
*'''To join the ACMS mailing list:''' Send mail to [mailto:acms+join@g-groups.wisc.edu acms+subscribe@g-groups.wisc.edu].


<br>   
<br>   


== Spring 2024  ==
== '''Spring 2025''' ==
 
{| cellpadding="8"
{| cellpadding="8"
!align="left" | date
! align="left" |Date
!align="left" | speaker
! align="left" |Speaker
!align="left" | title
! align="left" |Title
!align="left" | host(s)
! align="left" |Host(s)
|-
|Jan 31
|[https://people.math.wisc.edu/~tgchandler/ Thomas Chandler] (UW)
|[[#Chandler|''Fluid–structure interactions in active complex fluids'']]
|Spagnolie
|-
|-
| Jan 26
|Feb 7
|
|[https://afraser3.github.io/ Adrian Fraser] (Colorado)
|
|[[#Fraser|''Destabilization of transverse waves by periodic shear flows'']]
|
|Spagnolie
|-
|-
| Feb 2
|Feb 14
|[https://people.math.wisc.edu/~chr/ Chris Rycroft] (UW)
|[https://jrluedtke.github.io/ Jim Luedtke] (UW)
|''[[The reference map technique for simulating complex materials and multi-body interactions]]''
|[[#Luedtke|Using integer programming for verification of binarized neural networks]]
|
|Spagnolie
|-
|-
| Feb 9
|Feb 21
|[https://users.flatironinstitute.org/~sweady/ Scott Weady] (Flatiron Institute)
|[https://zhdankin.physics.wisc.edu/ Vladimir Zhdankin] (UW)
|''[[Applied/ACMS/absS24#Scott Weady (Flatiron Institute)|TBA]]''
|[[#Zhdankin|Exploring astrophysical plasma turbulence with particle-in-cell methods]]
|Saverio and Laurel
|Spagnolie
|-
|-
| Feb 16
|Feb 28
|[http://stokeslet.ucsd.edu/ David Saintillan] (UC San Diego)
|[https://nmboffi.github.io/ Nick Boffi] (CMU)
|''[[Applied/ACMS/absS24#David Saintillan (UC San Diego)|TBA]]''
|[[#Boffi|TBA]]
|Saverio and Tom
|Li
|-
|-
| Feb 23
|Mar 7
| sorry I need to hold this for a little while
|[https://sites.lsa.umich.edu/shankar-lab/ Suraj Shankar] (Michigan)
|
|[[#Shankar|TBA]]
|Spagnolie
|-
|Mar 14
|[https://lu.seas.harvard.edu/ Yue Lu] (Harvard) '''[Colloquium]'''
|[[#Lu|TBA]]
|Li
|Li
|-
|-
| Mar 1 [4:00pm Colloquium]
|Mar 21
|[https://users.oden.utexas.edu/~pgm/ Per-Gunnar Martinsson] (UT Austin)
|[https://people.llnl.gov/vogman1 Genia Vogman] (LLNL)
|''[[Applied/ACMS/absS24#Per-Gunnar Martinsson (UT-Austin)|TBA]]''
|[[#Vogman|TBA]]
|Li
|Li
|-
|-
| Mar 8
|Mar 28
|''Spring Break''
|
|
|
|-
|Apr 4
|TBA
|
|
|
|
|-
|-
| Mar 15
|Apr 11
|[https://www.math.purdue.edu/~qi117/personal.html/ Di Qi] (Purdue University)
|[https://meche.mit.edu/people/faculty/pierrel@mit.edu Pierre Lermusiaux] (MIT)
|''[[Applied/ACMS/absS24#Di Qi (Purdue University)|TBA]]''
|[[#Lermusiaux|TBA]]
|Chen
|Chen
|-
|-
| Mar 22
|Apr 18
|Spring break
|[https://www.math.uci.edu/~jxin/ Jack Xin] (UC Irvine) '''[Colloquium]'''
|[[#Xin|TBA]]
|
|
|
|-
| Mar 29
|[https://cersonsky-lab.github.io/website/ Rose Cersonsky] (UW)
|''[[Applied/ACMS/absS24#Rose Cersonsky (UW)|TBA]]''
|Chris
|-
| Apr 5
|[https://www.jinlongwu.org/ Jinlong Wu] (UW)
|''[[Applied/ACMS/absS24#Jinlong Wu (UW)|TBA]]''
|Saverio
|-
| Apr 12
|[https://zayascaban.labs.wisc.edu/ Gabriel Zayas-Caban] (UW)
|''[[Applied/ACMS/absS24#Gabriel Zayas-Caban (UW)|TBA]]''
|Li
|-
|-
| Apr 19
|Apr 25
|[https://www.nist.gov/people/anthony-j-kearsley Tony Kearsley] (NIST)
|[https://www-users.cse.umn.edu/~bcockbur/ Bernardo Cockburn] (Minnesota)
|''[[Applied/ACMS/absS24#Tony Kearsley (NIST)|TBA]]''
|[[#Cockburn|''Transforming stabilization into spaces'']]
|Fabien
| Stechmann, Fabien
|-
|-
| Apr 26
|May 2
|[https://math.oregonstate.edu/directory/malgorzata-peszynska Malgorzata Peszynska] (Oregon State)
|[https://sylviaherbert.com/ Sylvia Herbert] (UCSD)
|''[[Applied/ACMS/absS24#Malgorzata Peszynska (Oregon State)|TBA]]''
|[[#Herbert|TBA]]
|Fabien
|Chen
|-
|
|}
|}


== Abstracts ==
==Abstracts==


==== Chris Rycroft (UW–Madison) ====
<div id="Chandler">
Title: The reference map technique for simulating complex materials and multi-body interactions
====Thomas G. J. Chandler (UW)====
Title: Fluid-structure interactions in active complex fluids


Conventional computational methods often create a dilemma for fluid–structure interaction problems. Typically, solids are simulated using a Lagrangian approach with grid that moves with the material, whereas fluids are simulated using an Eulerian approach with a fixed spatial grid, requiring some type of interfacial coupling between the two different perspectives. Here, a fully Eulerian method for simulating structures immersed in a fluid will be presented [1]. By introducing a reference map variable to model finite-deformation constitutive relations in the structures on the same grid as the fluid, the interfacial coupling problem is highly simplified. The method is particularly well suited for simulating soft, highly-deformable materials and many-body contact problems [2], and several examples in two and three dimensions [3] will be presented.
Fluid anisotropy is central to many biological systems, from rod-like bacteria that self-assemble into dense swarms that function as fluids, to the cell cytoskeleton where the active alignment of stiff biofilaments is crucial to cell division. Nematic liquid crystals provide a powerful model for studying these complex environments. However, large immersed bodies elastically frustrate these fluids, leading to intricate interactions. This frustration can be alleviated through body deformations, at the cost of introducing internal stresses. Additionally, active stresses, arising from particle motility or molecular activity, disrupt nematic order by driving flows. In this presentation, I will demonstrate how complex variables enable analytical solutions to a broad range of problems, offering key insights into the roles of body geometry, anchoring conditions, interaction dynamics, activity-induced flows, and body deformations in many biological settings.


# K. Kamrin, C. H. Rycroft, and J.-C. Nave, J. Mech. Phys. Solids '''60''', 1952–1969 (2012). [https://doi.org/10.1073/pnas.2105338118 <nowiki>[DOI link]</nowiki>]
<div id="Fraser">
# C. H. Rycroft ''et al.'', J. Fluid Mech. '''898''', A9 (2020). [https://doi.org/10.1017/jfm.2020.353 <nowiki>[DOI link]</nowiki>]
====Adrian Fraser (Colorado)====
# Y. L. Lin, N. J. Derr, and C. H. Rycroft, Proc. Natl. Acad. Sci. '''119''', e2105338118 (2022). [https://doi.org/10.1016/j.jmps.2012.06.003 <nowiki>[DOI link]</nowiki>]
Title: Destabilization of transverse waves by periodic shear flows


== Future semesters ==
Periodic shear flows have the peculiar property that they are unstable to large-scale, transverse perturbations, and that this instability proceeds via a negative-eddy-viscosity mechanism (Dubrulle & Frisch, 1991). In this talk, I will show an example where this property causes transverse waves to become linearly unstable: a sinusoidal shear flow in the presence of a uniform, streamwise magnetic field in the framework of incompressible MHD. This flow is unstable to a KH-like instability for sufficiently weak magnetic fields, and uniform magnetic fields permit transverse waves known as Alfvén waves. Under the right conditions, these Alfvén waves become unstable, presenting a separate branch of instability that persists for arbitrarily strong magnetic fields which otherwise suppress the KH-like instability. After characterizing these waves with the help of a simple asymptotic expansion, I will show that they drive soliton-like waves in nonlinear simulations. With time permitting, I will discuss other fluid systems where similar dynamics are or may be found, including stratified flows and plasma drift waves.


*[[Applied/ACMS/Fall2024|Fall 2024]]
<div id="Luedtke">
====Jim Luedtke (UW)====
Title: Using integer programming for verification of binarized neural networks
 
Binarized neural networks (BNNs) are neural networks in which the weights are binary and the activation functions are the sign function. Verification of BNNs against input perturbation is one way to measure robustness of BNNs. BNN verification can be formulated as an integer linear optimization problem and hence can in theory be solved by state-of-the art methods for integer programming such as the branch-and-cut algorithm implemented in solvers like Gurobi. Unfortunately, the natural formulation is often difficult to solve in practice, even by the best such solvers, due to large integrality gap induced by its so-called "big-M" constraints. We present simple but effective techniques for improving the ability of the integer programming approach to solve the verification problem for BNNs. Along the way, we hope to illustrate more generally some of the strategies integer programmers use to attack difficult problems like this. We find that our techniques enable verifying BNNs against a higher range of input perturbation than using the natural formulation directly.
 
This is joint work with Woojin Kim, Mathematics PhD student at UW-Madison.
 
<div id="Zhdankin">
====Vladimir Zhdankin (UW)====
Title: Exploring astrophysical plasma turbulence with particle-in-cell methods
 
Plasmas throughout the universe (as well as in the laboratory) tend to exist in turbulent, nonequilibrium states due to their "collisionless" nature. Described by the Vlasov-Maxwell equations in a six-dimensional phase space (of position and momentum), the basic physics of such plasmas is difficult to model from first principles. There remain open questions about entropy production, nonthermal particle acceleration, energy partition amongst different particle species, and more. Particle-in-cell simulations are a numerical tool that allow us to explore in depth the rich dynamics and statistical mechanics of collisionless plasmas, validating analytical speculation. I will describe some of the results from my group's work on this topic.
 
<div id="Cockburn">
====Bernardo Cockburn (Minnesota)====
Title: Transforming stabilization into spaces
 
In the framework of finite element methods for ordinary differential equations, we consider the continuous Galerkin method (introduced in 72) and the discontinuous Galerkin method (introduced in 73/74). We uncover the fact that both methods discretize the time derivative in exactly the same form, and discuss a few of its consequences. We end by briefly describing our ongoing work on the extension of this result to some Galerkin methods for partial differential equations.


== Archived semesters ==
== Archived semesters ==


*[[Applied/ACMS/Fall2024|Fall 2024]]
*[[Applied/ACMS/Spring2024|Spring 2024]]
*[[Applied/ACMS/Fall2023|Fall 2023]]
*[[Applied/ACMS/Fall2023|Fall 2023]]
*[[Applied/ACMS/Spring2023|Spring 2023]]
*[[Applied/ACMS/Spring2023|Spring 2023]]

Latest revision as of 04:11, 15 February 2025


Applied and Computational Mathematics Seminar


Spring 2025

Date Speaker Title Host(s)
Jan 31 Thomas Chandler (UW) Fluid–structure interactions in active complex fluids Spagnolie
Feb 7 Adrian Fraser (Colorado) Destabilization of transverse waves by periodic shear flows Spagnolie
Feb 14 Jim Luedtke (UW) Using integer programming for verification of binarized neural networks Spagnolie
Feb 21 Vladimir Zhdankin (UW) Exploring astrophysical plasma turbulence with particle-in-cell methods Spagnolie
Feb 28 Nick Boffi (CMU) TBA Li
Mar 7 Suraj Shankar (Michigan) TBA Spagnolie
Mar 14 Yue Lu (Harvard) [Colloquium] TBA Li
Mar 21 Genia Vogman (LLNL) TBA Li
Mar 28 Spring Break
Apr 4 TBA
Apr 11 Pierre Lermusiaux (MIT) TBA Chen
Apr 18 Jack Xin (UC Irvine) [Colloquium] TBA
Apr 25 Bernardo Cockburn (Minnesota) Transforming stabilization into spaces Stechmann, Fabien
May 2 Sylvia Herbert (UCSD) TBA Chen

Abstracts

Thomas G. J. Chandler (UW)

Title: Fluid-structure interactions in active complex fluids

Fluid anisotropy is central to many biological systems, from rod-like bacteria that self-assemble into dense swarms that function as fluids, to the cell cytoskeleton where the active alignment of stiff biofilaments is crucial to cell division. Nematic liquid crystals provide a powerful model for studying these complex environments. However, large immersed bodies elastically frustrate these fluids, leading to intricate interactions. This frustration can be alleviated through body deformations, at the cost of introducing internal stresses. Additionally, active stresses, arising from particle motility or molecular activity, disrupt nematic order by driving flows. In this presentation, I will demonstrate how complex variables enable analytical solutions to a broad range of problems, offering key insights into the roles of body geometry, anchoring conditions, interaction dynamics, activity-induced flows, and body deformations in many biological settings.

Adrian Fraser (Colorado)

Title: Destabilization of transverse waves by periodic shear flows

Periodic shear flows have the peculiar property that they are unstable to large-scale, transverse perturbations, and that this instability proceeds via a negative-eddy-viscosity mechanism (Dubrulle & Frisch, 1991). In this talk, I will show an example where this property causes transverse waves to become linearly unstable: a sinusoidal shear flow in the presence of a uniform, streamwise magnetic field in the framework of incompressible MHD. This flow is unstable to a KH-like instability for sufficiently weak magnetic fields, and uniform magnetic fields permit transverse waves known as Alfvén waves. Under the right conditions, these Alfvén waves become unstable, presenting a separate branch of instability that persists for arbitrarily strong magnetic fields which otherwise suppress the KH-like instability. After characterizing these waves with the help of a simple asymptotic expansion, I will show that they drive soliton-like waves in nonlinear simulations. With time permitting, I will discuss other fluid systems where similar dynamics are or may be found, including stratified flows and plasma drift waves.

Jim Luedtke (UW)

Title: Using integer programming for verification of binarized neural networks

Binarized neural networks (BNNs) are neural networks in which the weights are binary and the activation functions are the sign function. Verification of BNNs against input perturbation is one way to measure robustness of BNNs. BNN verification can be formulated as an integer linear optimization problem and hence can in theory be solved by state-of-the art methods for integer programming such as the branch-and-cut algorithm implemented in solvers like Gurobi. Unfortunately, the natural formulation is often difficult to solve in practice, even by the best such solvers, due to large integrality gap induced by its so-called "big-M" constraints. We present simple but effective techniques for improving the ability of the integer programming approach to solve the verification problem for BNNs. Along the way, we hope to illustrate more generally some of the strategies integer programmers use to attack difficult problems like this. We find that our techniques enable verifying BNNs against a higher range of input perturbation than using the natural formulation directly.

This is joint work with Woojin Kim, Mathematics PhD student at UW-Madison.

Vladimir Zhdankin (UW)

Title: Exploring astrophysical plasma turbulence with particle-in-cell methods

Plasmas throughout the universe (as well as in the laboratory) tend to exist in turbulent, nonequilibrium states due to their "collisionless" nature. Described by the Vlasov-Maxwell equations in a six-dimensional phase space (of position and momentum), the basic physics of such plasmas is difficult to model from first principles. There remain open questions about entropy production, nonthermal particle acceleration, energy partition amongst different particle species, and more. Particle-in-cell simulations are a numerical tool that allow us to explore in depth the rich dynamics and statistical mechanics of collisionless plasmas, validating analytical speculation. I will describe some of the results from my group's work on this topic.

Bernardo Cockburn (Minnesota)

Title: Transforming stabilization into spaces

In the framework of finite element methods for ordinary differential equations, we consider the continuous Galerkin method (introduced in 72) and the discontinuous Galerkin method (introduced in 73/74). We uncover the fact that both methods discretize the time derivative in exactly the same form, and discuss a few of its consequences. We end by briefly describing our ongoing work on the extension of this result to some Galerkin methods for partial differential equations.

Archived semesters



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